No Promoter Left Behind - learn de novo promoter architectures from genome-wide TSSs
NPLB comes with a set of two commands: promoterLearn and promoterClassify. promoterLearn is used on a fasta file containing a list promoter sequences. It finds the optimal number of promoter architectures(PAs) each with their own set of promoter elements(PEs). promoterClassify can be used explore new PAs in a different dataset based on an existing model found by promoterLearn. It is also available as a web based application at http://nplb.ncl.res.in.